French version

Calcul de multiples hypothèses basé sur une méthode de réechantillonage

Permet notamment de faire des calculs de FDR, FWER, TPPFP ainsi que des calculs de variabilité. Les résultats sont exprimé en terme de p-value.

Cette bibliothèque est utilisable pour identifier les gènes exprimés de façon significativement différentes dans les analyses de puces à ADN.


English version

Resampling-based multiple hypothesis testing

Non-parametric bootstrap and permutation resampling-based multiple testing procedures for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Single-step and step-wise methods are implemented. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models) are included. Results are reported in terms of adjusted p-values, confindence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

Official website

R-multtest-1.14.0-0.1.fc6.i386.rpm

R-multtest-1.14.0-0.1.fc6.src.rpm

R-multtest.spec

To set up

su --login -c 'wget http://pingoured.dyndns.org/public/RPM/R-multtest/R-multtest-1.14.0-0.1.fc6.i386.rpm && rpm -Uvh R-multtest-1.14.0-0.1.fc6.i386.rpm'