Le blog de pingou - Tag - MulttestLe blog de pingou, ses actualités sur Fedora, ses RPMs, ses tests, son Linux... :-)
Pingou's weblog, his fedora's news, his RPMs, his tests, his Linux... :-)2022-02-17T10:46:15+01:00pingouurn:md5:66db5ce1ed1a80cb2f424695b4bb7780DotclearR-multtesturn:md5:a530fa94446c320908679e4c9eef74e12007-05-15T21:00:00+00:002007-07-30T17:22:05+00:00Pierre-YvesRPMsMulttestRRPM<p><img src="https://blog.pingoured.fr/blog/public/rpm.png" alt="rpm.png" />Resampling-based multiple hypothesis testing</p>
<p>Calcul de multiples hypothèses basé sur une méthode de réechantillonage</p> <p><strong><em>French version</em></strong></p>
<p>Calcul de multiples hypothèses basé sur une méthode de réechantillonage</p>
<p>Permet notamment de faire des calculs de FDR, FWER, TPPFP ainsi que des calculs de variabilité. Les résultats sont exprimé en terme de p-value.</p>
<p>Cette bibliothèque est utilisable pour identifier les gènes exprimés de façon significativement différentes dans les analyses de puces à ADN.</p>
<hr />
<p><strong><em>English version</em></strong></p>
<p>Resampling-based multiple hypothesis testing</p>
<p>Non-parametric bootstrap and permutation resampling-based multiple testing procedures for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Single-step and step-wise methods are implemented. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models) are included. Results are reported in terms of adjusted p-values, confindence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.</p>
<p><a href="http://www.bioconductor.org/packages/2.0/bioc/html/multtest.htmlEn">Official website</a></p>
<p><a href="http://pingoured.dyndns.org/public/RPM/R-multtest/R-multtest-1.14.0-0.1.fc6.i386.rpm">R-multtest-1.14.0-0.1.fc6.i386.rpm</a></p>
<p><a href="http://pingoured.dyndns.org/public/RPM/R-multtest/R-multtest-1.14.0-0.1.fc6.src.rpm">R-multtest-1.14.0-0.1.fc6.src.rpm</a></p>
<p><a href="http://pingoured.dyndns.org/public/RPM/R-multtest/R-multtest.spec">R-multtest.spec</a></p>
<p><ins><em>To set up</em></ins></p>
<p>su --login -c 'wget http://pingoured.dyndns.org/public/RPM/R-multtest/R-multtest-1.14.0-0.1.fc6.i386.rpm && rpm -Uvh R-multtest-1.14.0-0.1.fc6.i386.rpm'</p>